|
1. McBride, H. M., Neuspiel, M., and Wasiak, S. (2006) Mitochondria: more than just a powerhouse, Current biology : CB 16, R551-560. 2. Sherratt, H. S. (1991) Mitochondria: structure and function, Revue neurologique 147, 417-430. 3. Scheffler, I. E. (2001) Mitochondria make a come back, Advanced drug delivery reviews 49, 3-26. 4. Wikstrom, M. (1984) Pumping of protons from the mitochondrial matrix by cytochrome oxidase, Nature 308, 558-560. 5. Ogawa, S., and Lee, T. M. (1984) The relation between the internal phosphorylation potential and the proton motive force in mitochondria during ATP synthesis and hydrolysis, The Journal of biological chemistry 259, 10004-10011. 6. Smeitink, J., van den Heuvel, L., and DiMauro, S. (2001) The genetics and pathology of oxidative phosphorylation, Nature reviews. Genetics 2, 342-352. 7. Stojanovski, D., Johnston, A. J., Streimann, I., Hoogenraad, N. J., and Ryan, M. T. (2003) Import of nuclear-encoded proteins into mitochondria, Experimental physiology 88, 57-64. 8. Hirst, J., Carroll, J., Fearnley, I. M., Shannon, R. J., and Walker, J. E. (2003) The nuclear encoded subunits of complex I from bovine heart mitochondria, Biochimica et biophysica acta 1604, 135-150. 9. Hirst, J. (2013) Mitochondrial complex I, Annual review of biochemistry 82, 551-575. 10. Ohnishi, T. (1998) Iron-sulfur clusters/semiquinones in complex I, Biochimica et biophysica acta 1364, 186-206. 11. Hinchliffe, P., and Sazanov, L. A. (2005) Organization of iron-sulfur clusters in respiratory complex I, Science 309, 771-774. 12. Murphy, M. P. (2009) How mitochondria produce reactive oxygen species, The Biochemical journal 417, 1-13. 13. Hyslop, S. J., Duncan, A. M., Pitkanen, S., and Robinson, B. H. (1996) Assignment of the PSST subunit gene of human mitochondrial complex I to chromosome 19p13, Genomics 37, 375-380. 14. Baradaran, R., Berrisford, J. M., Minhas, G. S., and Sazanov, L. A. (2013) Crystal structure of the entire respiratory complex I, Nature 494, 443-448. 15. Duarte, M., Populo, H., Videira, A., Friedrich, T., and Schulte, U. (2002) Disruption of iron-sulphur cluster N2 from NADH: ubiquinone oxidoreductase by site-directed mutagenesis, The Biochemical journal 364, 833-839. 16. Duarte, M., Schulte, U., Ushakova, A. V., and Videira, A. (2005) Neurospora strains harboring mitochondrial disease-associated mutations in iron-sulfur subunits of complex I, Genetics 171, 91-99. 17. Copeland, J. M., Cho, J., Lo, T., Jr., Hur, J. H., Bahadorani, S., Arabyan, T., Rabie, J., Soh, J., and Walker, D. W. (2009) Extension of Drosophila life span by RNAi of the mitochondrial respiratory chain, Current biology : CB 19, 1591-1598. 18. Distelmaier, F., Koopman, W. J., van den Heuvel, L. P., Rodenburg, R. J., Mayatepek, E., Willems, P. H., and Smeitink, J. A. (2009) Mitochondrial complex I deficiency: from organelle dysfunction to clinical disease, Brain : a journal of neurology 132, 833-842. 19. Schapira, A. H. (2006) Mitochondrial disease, Lancet 368, 70-82. 20. Jaokar, T. M., R., S., and Suresh, C. G. (2013) Structural Effects of Leigh Syndrome Mutations on the Function of Human Mitochondrial Complex-I Q module, Biochem Physiol S2. 21. Lebon, S., Rodriguez, D., Bridoux, D., Zerrad, A., Rotig, A., Munnich, A., Legrand, A., and Slama, A. (2007) A novel mutation in the human complex I NDUFS7 subunit associated with Leigh syndrome, Molecular genetics and metabolism 90, 379-382. 22. Lebon, S., Minai, L., Chretien, D., Corcos, J., Serre, V., Kadhom, N., Steffann, J., Pauchard, J. Y., Munnich, A., Bonnefont, J. P., and Rotig, A. (2007) A novel mutation of the NDUFS7 gene leads to activation of a cryptic exon and impaired assembly of mitochondrial complex I in a patient with Leigh syndrome, Molecular genetics and metabolism 92, 104-108. 23. Esiri, M. M., and Wilcock, G. K. (1986) Cerebral amyloid angiopathy in dementia and old age, Journal of neurology, neurosurgery, and psychiatry 49, 1221-1226. 24. Yan, S. D., Fu, J., Soto, C., Chen, X., Zhu, H., Al-Mohanna, F., Collison, K., Zhu, A., Stern, E., Saido, T., Tohyama, M., Ogawa, S., Roher, A., and Stern, D. (1997) An intracellular protein that binds amyloid-beta peptide and mediates neurotoxicity in Alzheimer's disease, Nature 389, 689-695. 25. Vassar, R., Bennett, B. D., Babu-Khan, S., Kahn, S., Mendiaz, E. A., Denis, P., Teplow, D. B., Ross, S., Amarante, P., Loeloff, R., Luo, Y., Fisher, S., Fuller, J., Edenson, S., Lile, J., Jarosinski, M. A., Biere, A. L., Curran, E., Burgess, T., Louis, J. C., Collins, F., Treanor, J., Rogers, G., and Citron, M. (1999) Beta-secretase cleavage of Alzheimer's amyloid precursor protein by the transmembrane aspartic protease BACE, Science 286, 735-741. 26. Frykman, S., Teranishi, Y., Hur, J. Y., Sandebring, A., Yamamoto, N. G., Ancarcrona, M., Nishimura, T., Winblad, B., Bogdanovic, N., Schedin-Weiss, S., Kihara, T., and Tjernberg, L. O. (2012) Identification of two novel synaptic gamma-secretase associated proteins that affect amyloid beta-peptide levels without altering Notch processing, Neurochemistry international 61, 108-118. 27. Chou, T. F. (2009) Human mitochondrial complex I NDUFS7 subunit has a dual distribution both in mitochondria and nuclei, Master Thesis, National Tshing Hua University. 28. Terry, L. J., Shows, E. B., and Wente, S. R. (2007) Crossing the nuclear envelope: hierarchical regulation of nucleocytoplasmic transport, Science 318, 1412-1416. 29. Jans, D. A., Xiao, C. Y., and Lam, M. H. (2000) Nuclear targeting signal recognition: a key control point in nuclear transport?, BioEssays : news and reviews in molecular, cellular and developmental biology 22, 532-544. 30. Nardozzi, J. D., Lott, K., and Cingolani, G. (2010) Phosphorylation meets nuclear import: a review, Cell communication and signaling : CCS 8, 32. 31. Mao, C., Ozer, Z., Zhou, M., and Uckun, F. M. (1999) X-Ray structure of glycerol kinase complexed with an ATP analog implies a novel mechanism for the ATP-dependent glycerol phosphorylation by glycerol kinase, Biochemical and biophysical research communications 259, 640-644. 32. Cole, P. A., Shen, K., Qiao, Y., and Wang, D. (2003) Protein tyrosine kinases Src and Csk: a tail's tale, Current opinion in chemical biology 7, 580-585. 33. Babior, B. M. (1999) NADPH oxidase: an update, Blood 93, 1464-1476. 34. Deutscher, J., and Saier, M. H., Jr. (2005) Ser/Thr/Tyr protein phosphorylation in bacteria - for long time neglected, now well established, Journal of molecular microbiology and biotechnology 9, 125-131. 35. Ciesla, J., Fraczyk, T., and Rode, W. (2011) Phosphorylation of basic amino acid residues in proteins: important but easily missed, Acta biochimica Polonica 58, 137-148. 36. Guan, K. L., and Butch, E. (1995) Isolation and characterization of a novel dual specific phosphatase, HVH2, which selectively dephosphorylates the mitogen-activated protein kinase, J Biol Chem 270, 7197-7203. 37. Mellgren, R. L., Slaughter, G. R., and Thomas, J. A. (1977) Dephosphorylation of phosphoproteins by Escherichia coli alkaline phosphatase, J Biol Chem 252, 6082-6089. 38. MacKintosh, C., Coggins, J., and Cohen, P. (1991) Plant protein phosphatases. Subcellular distribution, detection of protein phosphatase 2C and identification of protein phosphatase 2A as the major quinate dehydrogenase phosphatase, The Biochemical journal 273 ( Pt 3), 733-738. 39. Gatica, M., Hinrichs, M. V., Jedlicki, A., Allende, C. C., and Allende, J. E. (1993) Effect of metal ions on the activity of casein kinase II from Xenopus laevis, Febs Lett 315, 173-177. 40. Hunter, T. (1991) Protein kinase classification, Methods in enzymology 200, 3-37. 41. Nishizuka, Y. (1984) The role of protein kinase C in cell surface signal transduction and tumour promotion, Nature 308, 693-698. 42. Schnaper, H. W. (1998) Cell signal transduction through the mitogen-activated protein kinase pathway, Pediatric nephrology 12, 790-795. 43. Obata, K., Yamanaka, H., Dai, Y., Mizushima, T., Fukuoka, T., Tokunaga, A., and Noguchi, K. (2004) Activation of extracellular signal-regulated protein kinase in the dorsal root ganglion following inflammation near the nerve cell body, Neuroscience 126, 1011-1021. 44. Brown, M. T., and Cooper, J. A. (1996) Regulation, substrates and functions of src, Biochimica et biophysica acta 1287, 121-149. 45. Gao, J., Zoller, K. E., Ginsberg, M. H., Brugge, J. S., and Shattil, S. J. (1997) Regulation of the pp72syk protein tyrosine kinase by platelet integrin alpha IIb beta 3, The EMBO journal 16, 6414-6425. 46. Cance, W. G., Craven, R. J., Bergman, M., Xu, L., Alitalo, K., and Liu, E. T. (1994) Rak, a novel nuclear tyrosine kinase expressed in epithelial cells, Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research 5, 1347-1355. 47. Moarefi, I., LaFevre-Bernt, M., Sicheri, F., Huse, M., Lee, C. H., Kuriyan, J., and Miller, W. T. (1997) Activation of the Src-family tyrosine kinase Hck by SH3 domain displacement, Nature 385, 650-653. 48. Okada, M., Nada, S., Yamanashi, Y., Yamamoto, T., and Nakagawa, H. (1991) CSK: a protein-tyrosine kinase involved in regulation of src family kinases, The Journal of biological chemistry 266, 24249-24252. 49. Cartwright, C. A., Eckhart, W., Simon, S., and Kaplan, P. L. (1987) Cell transformation by pp60c-src mutated in the carboxy-terminal regulatory domain, Cell 49, 83-91. 50. Reynolds, A. B., Vila, J., Lansing, T. J., Potts, W. M., Weber, M. J., and Parsons, J. T. (1987) Activation of the oncogenic potential of the avian cellular src protein by specific structural alteration of the carboxy terminus, The EMBO journal 6, 2359-2364. 51. Superti-Furga, G., and Courtneidge, S. A. (1995) Structure-function relationships in Src family and related protein tyrosine kinases, BioEssays : news and reviews in molecular, cellular and developmental biology 17, 321-330. 52. Reynolds, A. B., Kanner, S. B., Wang, H. C., and Parsons, J. T. (1989) Stable association of activated pp60src with two tyrosine-phosphorylated cellular proteins, Molecular and cellular biology 9, 3951-3958. 53. Brandvold, K. R., Steffey, M. E., Fox, C. C., and Soellner, M. B. (2012) Development of a highly selective c-Src kinase inhibitor, ACS chemical biology 7, 1393-1398. 54. Salvi, M., Brunati, A. M., Bordin, L., La Rocca, N., Clari, G., and Toninello, A. (2002) Characterization and location of Src-dependent tyrosine phosphorylation in rat brain mitochondria, Biochimica et biophysica acta 1589, 181-195. 55. Valente, E. M., Abou-Sleiman, P. M., Caputo, V., Muqit, M. M., Harvey, K., Gispert, S., Ali, Z., Del Turco, D., Bentivoglio, A. R., Healy, D. G., Albanese, A., Nussbaum, R., Gonzalez-Maldonado, R., Deller, T., Salvi, S., Cortelli, P., Gilks, W. P., Latchman, D. S., Harvey, R. J., Dallapiccola, B., Auburger, G., and Wood, N. W. (2004) Hereditary early-onset Parkinson's disease caused by mutations in PINK1, Science 304, 1158-1160. 56. Miyazaki, T., Neff, L., Tanaka, S., Horne, W. C., and Baron, R. (2003) Regulation of cytochrome c oxidase activity by c-Src in osteoclasts, The Journal of cell biology 160, 709-718. 57. Miyazaki, T., Tanaka, S., Sanjay, A., and Baron, R. (2006) The role of c-Src kinase in the regulation of osteoclast function, Modern rheumatology / the Japan Rheumatism Association 16, 68-74. 58. Tibaldi, E., Brunati, A. M., Massimino, M. L., Stringaro, A., Colone, M., Agostinelli, E., Arancia, G., and Toninello, A. (2008) Src-Tyrosine kinases are major agents in mitochondrial tyrosine phosphorylation, Journal of cellular biochemistry 104, 840-849. 59. Augereau, O., Claverol, S., Boudes, N., Basurko, M. J., Bonneu, M., Rossignol, R., Mazat, J. P., Letellier, T., and Dachary-Prigent, J. (2005) Identification of tyrosine-phosphorylated proteins of the mitochondrial oxidative phosphorylation machinery, Cellular and molecular life sciences : CMLS 62, 1478-1488. 60. Hebert Chatelain, E., Dupuy, J. W., Letellier, T., and Dachary-Prigent, J. (2011) Functional impact of PTP1B-mediated Src regulation on oxidative phosphorylation in rat brain mitochondria, Cellular and molecular life sciences : CMLS 68, 2603-2613. 61. Ogura, M., Yamaki, J., Homma, M. K., and Homma, Y. (2012) Mitochondrial c-Src regulates cell survival through phosphorylation of respiratory chain components, The Biochemical journal 447, 281-289. 62. Hebert-Chatelain, E., Jose, C., Gutierrez Cortes, N., Dupuy, J. W., Rocher, C., Dachary-Prigent, J., and Letellier, T. (2012) Preservation of NADH ubiquinone-oxidoreductase activity by Src kinase-mediated phosphorylation of NDUFB10, Biochimica et biophysica acta 1817, 718-725. 63. Uckun, F. M., Tuel-Ahlgren, L., Waddick, K. G., Jun, X., Jin, J., Myers, D. E., Rowley, R. B., Burkhardt, A. L., and Bolen, J. B. (1996) Physical and functional interactions between Lyn and p34cdc2 kinases in irradiated human B-cell precursors, The Journal of biological chemistry 271, 6389-6397. 64. Qin, S., Minami, Y., Kurosaki, T., and Yamamura, H. (1997) Distinctive functions of Syk and Lyn in mediating osmotic stress- and ultraviolet C irradiation-induced apoptosis in chicken B cells, The Journal of biological chemistry 272, 17994-17999. 65. Belka, C., Marini, P., Lepple-Wienhues, A., Budach, W., Jekle, A., Los, M., Lang, F., Schulze-Osthoff, K., Gulbins, E., and Bamberg, M. (1999) The tyrosine kinase lck is required for CD95-independent caspase-8 activation and apoptosis in response to ionizing radiation, Oncogene 18, 4983-4992. 66. Samraj, A. K., Stroh, C., Fischer, U., and Schulze-Osthoff, K. (2006) The tyrosine kinase Lck is a positive regulator of the mitochondrial apoptosis pathway by controlling Bak expression, Oncogene 25, 186-197. 67. Lluis, J. M., Buricchi, F., Chiarugi, P., Morales, A., and Fernandez-Checa, J. C. (2007) Dual role of mitochondrial reactive oxygen species in hypoxia signaling: activation of nuclear factor-{kappa}B via c-SRC and oxidant-dependent cell death, Cancer research 67, 7368-7377. 68. Schmidt, H., Siems, W., Muller, M., Dumdey, R., and Rapoport, S. M. (1991) ATP-producing and consuming processes of Ehrlich mouse ascites tumor cells in proliferating and resting phases, Experimental cell research 194, 122-127. 69. Ishizawar, R., and Parsons, S. J. (2004) c-Src and cooperating partners in human cancer, Cancer cell 6, 209-214. 70. Sato, H., Sato, M., Kanai, H., Uchiyama, T., Iso, T., Ohyama, Y., Sakamoto, H., Tamura, J., Nagai, R., and Kurabayashi, M. (2005) Mitochondrial reactive oxygen species and c-Src play a critical role in hypoxic response in vascular smooth muscle cells, Cardiovascular research 67, 714-722. 71. Guarino, M. (2010) Src signaling in cancer invasion, Journal of cellular physiology 223, 14-26. 72. Arachiche, A., Augereau, O., Decossas, M., Pertuiset, C., Gontier, E., Letellier, T., and Dachary-Prigent, J. (2008) Localization of PTP-1B, SHP-2, and Src exclusively in rat brain mitochondria and functional consequences, The Journal of biological chemistry 283, 24406-24411. 73. Salvi, M., Morrice, N. A., Brunati, A. M., and Toninello, A. (2007) Identification of the flavoprotein of succinate dehydrogenase and aconitase as in vitro mitochondrial substrates of Fgr tyrosine kinase, FEBS letters 581, 5579-5585. 74. Ubersax, J. A., and Ferrell, J. E., Jr. (2007) Mechanisms of specificity in protein phosphorylation, Nature reviews. Molecular cell biology 8, 530-541. 75. Songyang, Z., Carraway, K. L., 3rd, Eck, M. J., Harrison, S. C., Feldman, R. A., Mohammadi, M., Schlessinger, J., Hubbard, S. R., Smith, D. P., Eng, C., and et al. (1995) Catalytic specificity of protein-tyrosine kinases is critical for selective signalling, Nature 373, 536-539. 76. Fu, Y., Yang, G., Zhu, F., Peng, C., Li, W., Li, H., Kim, H. G., Bode, A. M., Dong, Z., and Dong, Z. (2014) Antioxidants decrease the apoptotic effect of 5-Fu in colon cancer by regulating Src-dependent caspase-7 phosphorylation, Cell death & disease 5, e983. 77. Wimmer, P., Blanchette, P., Schreiner, S., Ching, W., Groitl, P., Berscheminski, J., Branton, P. E., Will, H., and Dobner, T. (2013) Cross-talk between phosphorylation and SUMOylation regulates transforming activities of an adenoviral oncoprotein, Oncogene 32, 1626-1637. 78. Guo, Z., Kanjanapangka, J., Liu, N., Liu, S., Liu, C., Wu, Z., Wang, Y., Loh, T., Kowolik, C., Jamsen, J., Zhou, M., Truong, K., Chen, Y., Zheng, L., and Shen, B. (2012) Sequential posttranslational modifications program FEN1 degradation during cell-cycle progression, Molecular cell 47, 444-456. 79. Yao, Q., Liu, B. Q., Li, H., McGarrigle, D., Xing, B. W., Zhou, M. T., Wang, Z., Zhang, J. J., Huang, X. Y., and Guo, L. (2014) C-terminal Src kinase (Csk)-mediated phosphorylation of eukaryotic elongation factor 2 (eEF2) promotes proteolytic cleavage and nuclear translocation of eEF2, The Journal of biological chemistry 289, 12666-12678. 80. Dadke, S., Cotteret, S., Yip, S. C., Jaffer, Z. M., Haj, F., Ivanov, A., Rauscher, F., 3rd, Shuai, K., Ng, T., Neel, B. G., and Chernoff, J. (2007) Regulation of protein tyrosine phosphatase 1B by sumoylation, Nature cell biology 9, 80-85. 81. Hietakangas, V., Anckar, J., Blomster, H. A., Fujimoto, M., Palvimo, J. J., Nakai, A., and Sistonen, L. (2006) PDSM, a motif for phosphorylation-dependent SUMO modification, Proceedings of the National Academy of Sciences of the United States of America 103, 45-50. 82. Papa, S., De Rasmo, D., Scacco, S., Signorile, A., Technikova-Dobrova, Z., Palmisano, G., Sardanelli, A. M., Papa, F., Panelli, D., Scaringi, R., and Santeramo, A. (2008) Mammalian complex I: a regulable and vulnerable pacemaker in mitochondrial respiratory function, Biochimica et biophysica acta 1777, 719-728. 83. De Rasmo, D., Panelli, D., Sardanelli, A. M., and Papa, S. (2008) cAMP-dependent protein kinase regulates the mitochondrial import of the nuclear encoded NDUFS4 subunit of complex I, Cellular signalling 20, 989-997. 84. Robin, M. A., Anandatheerthavarada, H. K., Biswas, G., Sepuri, N. B., Gordon, D. M., Pain, D., and Avadhani, N. G. (2002) Bimodal targeting of microsomal CYP2E1 to mitochondria through activation of an N-terminal chimeric signal by cAMP-mediated phosphorylation, The Journal of biological chemistry 277, 40583-40593. 85. Robin, M. A., Prabu, S. K., Raza, H., Anandatheerthavarada, H. K., and Avadhani, N. G. (2003) Phosphorylation enhances mitochondrial targeting of GSTA4-4 through increased affinity for binding to cytoplasmic Hsp70, The Journal of biological chemistry 278, 18960-18970. 86. Cesaro, L., and Salvi, M. (2010) Mitochondrial tyrosine phosphoproteome: new insights from an up-to-date analysis, BioFactors 36, 437-450.
|