|
1. Engel, J., et al., Structure, Stability and Folding of the Collagen Triple Helix. In Collagen: Primer in Structure, Processing and Assembly, Brinckmann, J., et al., Eds. Springer Berlin Heidelberg: Berlin, Heidelberg, 2005; pp 7-33. 2. Li, X., et al., The Chemistry and Biology of Collagen Hybridization. J. Am. Chem. Soc. 2023, 145 (20), 10901–10916. 3. Xu, Y., et al., Collagen Mimetic Peptides. Bioengineering 2021, 8 (1), 5. 4. Zhang, Q., et al., Controlling the Trimerization of the Collagen Triple-Helix by Solvent Switching. Biomacromolecules 2023, 24 (4), 1689-1699. 5. O'Grady, J. E., et al., Global Regulatory Registration Requirements for Collagen-Based Combination Products: Points to Consider. Adv. Drug Delivery Rev. 2003, 55 (12), 1699-1721. 6. Sun, X., et al., Peptide-Triggered Self-Assembly of Collagen Mimetic Peptides into Nanospheres by Electrostatic Interaction and π–π Stacking. J. Mater. Chem. B 2023, 11, 4677-4683. 7. Hulgan, S. A. H., et al., Recent Advances in Collagen Mimetic Peptide Structure and Design. Biomacromolecules 2022, 23 (4), 1475-1489. 8. Kim, B. S., et al., 3D Cell Printing of in vitro Stabilized Skin Model and in vivo Pre-Vascularized Skin Patch Using Tissue-Specific Extracellular Matrix Bioink: A Step Towards Advanced Skin Tissue Engineering. Biomaterials 2018, 168, 38-53. 9. Ruszczak, Z., et al., Collagen as a Carrier for on-Site Delivery of Antibacterial Drugs. Adv. Drug Delivery Rev. 2003, 55 (12), 1679-1698. 10. Wang, Y., et al., Collagen-Based Biomaterials for Tissue Engineering. ACS Biomater. Sci. Eng. 2023, 9 (3), 1132-1150. 11. Bhatnagar, R. S., et al., Circular Dichroism of Collagen and Related Polypeptides. In Circular Dichroism and the Conformational Analysis of Biomolecules, Fasman, G. D., Ed. Springer US: Boston, MA, 1996; pp 183-199. 12. Zhang, X., et al., Factors Affecting Thermal Stability of Collagen from the Aspects of Extraction, Processing and Modification. J. Leather Sci. Eng. 2020, 2 (1), 19. 13. Ramachandran, G. N., et al., Structure of Collagen. Nature 1955, 176 (4482), 593-595. 14. Ramachandran, G. N., et al., Structure of Collagen. Nature 1954, 174 (4423), 269-270. 15. Rich, A., et al., The Molecular Structure of Collagen. J. Mol. Biol. 1961, 3 (5), 483-506. 16. Okuyama, K., et al., A New Structural Model for Collagen. Polym. J. 1977, 9 (3), 341-343. 17. Bella, J., et al., Crystal and Molecular Structure of a Collagen-Like Peptide at 1.9 Å Resolution. Science 1994, 266 (5182), 75-81. 18. Okuyama, K., et al., Revision of Collagen Molecular Structure. Pept. Sci. 2006, 84 (2), 181-191. 19. Shoulders, M. D., et al., Collagen Structure and Stability. Annu. Rev. Biochem 2009, 78 (1), 929-958. 20. Okuyama, K., Revisiting the Molecular Structure of Collagen. Connect. Tissue Res. 2008, 49 (5), 299-310. 21. Cram, D. J., The Design of Molecular Hosts, Guests, and Their Complexes. Science 1988, 240 (4853), 760-767. 22. Hinderaker, M. P., et al., An Electronic Effect on Protein Structure. Protein Sci. 2003, 12 (6), 1188-1194. 23. Newberry, R. W., et al., The n→π* Interaction. Acc. Chem. Res. 2017, 50 (8), 1838-1846. 24. Privalov, P. L., Stability of Proteins: Proteins Which Do Not Present a Single Cooperative System. In Adv. Protein Chem., Anfinsen, C. B., et al., Eds. Academic Press: 1982; Vol. 35, pp 1-104. 25. Brodsky, B., et al., The Collagen Triple-Helix Structure. Matrix Biol. 1997, 15 (8), 545-554. 26. Bella, J., et al., Hydration Structure of a Collagen Peptide. Structure 1995, 3 (9), 893-906. 27. Bansal, M., Stereochemical Restrictions on the Occurrence of Amino Acid Residues in the Collagen Structure. Int. J. Pept. Protein Res. 1977, 9 (3), 224-234. 28. Persikov, A. V., et al., Electrostatic Interactions Involving Lysine Make Major Contributions to Collagen Triple-Helix Stability. Biochemistry 2005, 44 (5), 1414-1422. 29. Chen, C.-C., et al., Contributions of Cation–π Interactions to the Collagen Triple Helix Stability. Arch. Biochem. Biophys. 2011, 508 (1), 46-53. 30. Walker, D. R., et al., Charge-Free, Stabilizing Amide−π Interactions Can Be Used to Control Collagen Triple-Helix Self-Assembly. Biomacromolecules 2021, 22 (5), 2137-2147. 31. Hulgan, S. A. H., et al., Covalent Capture of Collagen Triple Helices Using Lysine–Aspartate and Lysine–Glutamate Pairs. Biomacromolecules 2020, 21 (9), 3772-3781. 32. Jenkins, C. L., et al., Insights on the Conformational Stability of Collagen. Nat. Prod. Rep. 2002, 19 (1), 49-59. 33. Li, I. C., et al., Covalent Capture of a Heterotrimeric Collagen Helix. Org. Lett. 2019, 21 (14), 5480-5484. 34. Goodman, M., et al., A Template-Induced Incipient Collagen-Like Triple-Helical Structure. J. Am. Chem. Soc. 1996, 118 (21), 5156-5157. 35. Kwak, J., et al., TREN (Tris(2-aminoethyl)amine): An Effective Scaffold for the Assembly of Triple Helical Collagen Mimetic Structures. J. Am. Chem. Soc. 2002, 124 (47), 14085-14091. 36. Priem, C., et al., Reversible Covalent End-Capping of Collagen Model Peptides. Chem. Eur. J. 2019, 25 (63), 14278-14283. 37. Thakur, S., et al., Influence of Different Tripeptides on the Stability of the Collagen Triple Helix. II. An Experimental Approach with Appropriate Variations of a Trimer Model Oligotripeptide. Biopolymers 1986, 25 (6), 1081-1086. 38. Ottl, J., et al., Disulfide-Bridged Heterotrimeric Collagen Peptides Containing the Collagenase Cleavage Site of Collagen Type I. Synthesis and Conformational Properties. J. Am. Chem. Soc. 1999, 121 (4), 653-661. 39. Ramshaw, J. A. M., et al., Gly-X-Y Tripeptide Frequencies in Collagen: A Context for Host–Guest Triple-Helical Peptides. Journal of Structural Biology 1998, 122 (1), 86-91. 40. Persikov, A. V., et al., Amino Acid Propensities for the Collagen Triple-Helix. Biochemistry 2000, 39 (48), 14960-14967. 41. Mendes, A. C., et al., Self-Assembly in Nature: Using the Principles of Nature to Create Complex Nanobiomaterials. WIREs Nanomed. Nanobiotechnol. 2013, 5 (6), 582-612. 42. Whitesides, G. M., et al., Beyond Molecules: Self-Assembly of Mesoscopic and Macroscopic Components. Proc. Natl. Acad. Sci. U.S.A. 2002, 99 (8), 4769-4774. 43. Bera, S., et al., Molecular Engineering of Piezoelectricity in Collagen-Mimicking Peptide Assemblies. Nat. Commun. 2021, 12 (1), 2634. 44. Chen, C.-C., et al., Self-Assembly of Short Collagen-Related Peptides into Fibrils via Cation−π Interactions. Biochemistry 2011, 50 (13), 2381-2383. 45. Luo, J., et al., Self-Assembly of Collagen-Mimetic Peptide Amphiphiles into Biofunctional Nanofiber. ACS Nano 2011, 5 (10), 7739-7747. 46. Jiang, T., et al., Structurally Defined Nanoscale Sheets from Self-Assembly of Collagen-Mimetic Peptides. J. Am. Chem. Soc. 2014, 136 (11), 4300-4308. 47. Krishna, O. D., et al., Supramolecular Assembly of Electrostatically Stabilized, Hydroxyproline-Lacking Collagen-Mimetic Peptides. Biomacromolecules 2009, 10 (9), 2626-2631. 48. Hwang, J., et al., In Situ Imaging of Tissue Remodeling with Collagen Hybridizing Peptides. ACS Nano 2017, 11 (10), 9825-9835. 49. Kar, K., et al., Aromatic Interactions Promote Self-Association of Collagen Triple-Helical Peptides to Higher-Order Structures. Biochemistry 2009, 48 (33), 7959-7968. 50. Paramonov, S. E., et al., Synthesis of Collagen-Like Peptide Polymers by Native Chemical Ligation. Macromolecules 2005, 38 (18), 7555-7561. 51. Przybyla, D. E., et al., Metal-Triggered Collagen Peptide Disk Formation. J. Am. Chem. Soc. 2010, 132 (23), 7866-7867. 52. Pires, M. M., et al., Self-Assembly of Collagen Peptides into Microflorettes via Metal Coordination. J. Am. Chem. Soc. 2009, 131 (7), 2706-2712. 53. Ting, Y.-H., et al., Zinc(II)–Histidine Induced Collagen Peptide Assemblies: Morphology Modulation and Hydrolytic Catalysis Evaluation. Biomacromolecules 2018, 19 (7), 2629-2637. 54. Zou, R., et al., Peptide Self-Assembly Triggered by Metal Ions. Chem. Soc. Rev. 2015, 44 (15), 5200-5219. 55. Albrecht, M., et al., Metallacyclopeptides: Artificial Analogues of Naturally Occurring Peptides. Chem. Soc. Rev. 2005, 34 (6), 496-506. 56. Crichton, R. R., 3 - Biological Ligands for Metal Ions. In Biological Inorganic Chemistry, Crichton, R. R., Ed. Elsevier: Amsterdam, 2008; pp 27-42. 57. Przybyla, D. E., et al., Metal-Triggered Radial Self-Assembly of Collagen Peptide Fibers. J. Am. Chem. Soc. 2008, 130 (38), 12610-12611. 58. Hsu, W., et al., Promoting Self-Assembly of Collagen-Related Peptides into Various Higher-Order Structures by Metal–Histidine Coordination. Langmuir 2012, 28 (6), 3194-3199. 59. Malafaya, P. B., et al., Natural–Origin Polymers as Carriers and Scaffolds for Biomolecules and Cell Delivery in Tissue Engineering Applications. Adv. Drug Delivery Rev. 2007, 59 (4), 207-233. 60. Zhang, W., et al., Protein-Mimetic Peptide Nanofibers: Motif Design, Self-Assembly Synthesis, and Sequence-Specific Biomedical Applications. Prog. Polym. Sci. 2018, 80, 94-124. 61. Przybyla, D. E., et al., Hierarchical Assembly of Collagen Peptide Triple Helices into Curved Disks and Metal Ion-Promoted Hollow Spheres. J. Am. Chem. Soc. 2013, 135 (9), 3418-3422. 62. Gleaton, J., et al., Thermally Controlled Collagen Peptide Cages for Biopolymer Delivery. ACS Biomater. Sci. Eng. 2015, 1 (10), 1002-1008. 63. Chen, Y., et al., Bio-Inspired Hydrogels with Fibrous Structure: A Review on Design and Biomedical Applications. Biomater. Adv. 2022, 136, 212799. 64. Hu, W., et al., Advances in Crosslinking Strategies of Biomedical Hydrogels. Biomater. Sci. 2019, 7 (3), 843-855. 65. Jaya Maitra, V. K. S., Cross-Linking in Hydrogels - a Review. Am. J. Polym. Sci. 2014, 4 (2), 25-31. 66. Lv, Q., et al., Fibroin/Collagen Hybrid Hydrogels with Crosslinking Method: Preparation, Properties, and Cytocompatibility. J. Biomed. Mater. Res., Part A 2008, 84A (1), 198-207. 67. Merkley, E. D., et al., Distance Restraints from Crosslinking Mass Spectrometry: Mining a Molecular Dynamics Simulation Database to Evaluate Lysine–Lysine Distances. Protein Sci. 2014, 23 (6), 747-759. 68. Yang, K., et al., Photo-Crosslinked Mono-Component Type II Collagen Hydrogel as a Matrix to Induce Chondrogenic Differentiation of Bone Marrow Mesenchymal Stem Cells. J. Mater. Chem. B 2017, 5 (44), 8707-8718. 69. Farris, S., et al., Alternative Reaction Mechanism for the Cross-Linking of Gelatin with Glutaraldehyde. J. Agric. Food. Chem. 2010, 58 (2), 998-1003. 70. Jenkins, C. L., et al., Peptide Bond Isosteres: Ester or (E)-Alkene in the Backbone of the Collagen Triple Helix. Org. Lett. 2005, 7 (13), 2619-2622. 71. Fischer, E., Untersuchungen Ber. Dtsch. Chem. Ges. 1906, 39 (1), 530-610. 72. Vigneaud, V. d., et al., The Synthesis of an Octapeptide Amide with the Hormonal Activity of Oxytocin. J. Am. Chem. Soc. 1953, 75 (19), 4879-4880. 73. Merrifield, R. B., Solid Phase Peptide Synthesis. I. The Synthesis of a Tetrapeptide. J. Am. Chem. Soc. 1963, 85 (14), 2149-2154. 74. Behrendt, R., et al., Advances in Fmoc Solid-Phase Peptide Synthesis. J. Pept. Sci. 2016, 22 (1), 4-27. 75. Hansen, P. R., et al., Fmoc Solid-Phase Peptide Synthesis. In Peptide Antibodies: Methods and Protocols, Houen, G., Ed. Springer New York: New York, NY, 2015; Vol. 1348, pp 33-50. 76. Mollica, A., et al., The Evolution of Peptide Synthesis: From Early Days to Small Molecular Machines. Curr. Bioact. Compd. 2013, 9 (3), 184-202. 77. Palomo, J. M., Solid-Phase Peptide Synthesis: An Overview Focused on the Preparation of Biologically Relevant Peptides. RSC Adv. 2014, 4 (62), 32658-32672. 78. Atherton, E., et al., A Mild Procedure for Solid Phase Peptide Synthesis: Use of Fluorenylmethoxycarbonylamino-Acids. J. Chem. Soc., Chem. Commun. 1978, (13), 537-539. 79. Merrifield, R. B., Solid Phase Synthesis (Nobel Lecture). Angew. Chem., Int. Ed. Engl. 1985, 24 (10), 799-810. 80. El-Faham, A., et al., Peptide Coupling Reagents, More Than a Letter Soup. Chem. Rev. 2011, 111 (11), 6557-6602. 81. Liu, M., et al., Synthesis of BVD15 Peptide Analogues as Models for Radioligands in Tumour Imaging. Int. J. Pept. Res. Ther. 2013, 19 (1), 33-41. 82. Wester, A., et al., Perfluoro-Tert-Butanol for Selective on-Resin Detritylation: A Mild Alternative to Traditionally Used Methods. Amino Acids 2021, 53 (9), 1455-1466. 83. Li, D., et al., The Kinetics of the Removal of the n-Methyltrityl (Mtt) Group During the Synthesis of Branched Peptides. J. Peptide Res. 2002, 60 (5), 300-303. 84. Greenfield, N. J., et al., Computed Circular Dichroism Spectra for the Evaluation of Protein Conformation. Biochemistry 1969, 8 (10), 4108-4116. 85. Berndt, K. D. Circular Dichroism Spectroscopy. https://www.cryst.bbk.ac.uk/PPS2/course/section8/ss-960531_21.html (accessed 11 May, 2023). 86. Circular Polarization. https://en.wikipedia.org/w/index.php?title=Circular_polarization&oldid=1148633801 (accessed 11 May, 2023). 87. Ilze, A., et al., Compositional and Optical Gradient in Films of PbZrxTi1-XO3 (PZT) Family. In Ferroelectrics, Mickaël, L., Ed. IntechOpen: Rijeka, 2011; pp 579-602. 88. Greenfield, N. J., Using Circular Dichroism Spectra to Estimate Protein Secondary Structure. Nat. Protoc. 2006, 1 (6), 2876-2890. 89. 陳家全、李家維、楊瑞森, 生物電子顯微鏡. 行政院國家科學委員會精密儀器發展中心, 新竹市, 1991. 90. Maver, U., et al., Recent Progressive Use of Atomic Force Microscopy in Biomedical Applications. TrAC, Trends Anal. Chem. 2016, 80, 96-111. 91. Nguyen-Tri, P., et al., Recent Applications of Advanced Atomic Force Microscopy in Polymer Science: A Review. Polymers 2020, 12 (5), 1142. 92. AFM Scanning Modes. https://www.maxiv.lu.se/beamlines-accelerators/support-labs/microscopy-labs/atomic-force-microscope/afm-scanning-modes/ (accessed 12 May, 2023). 93. 姚子柔. 利用cation-π作用力及交聯作用提升膠原蛋白模擬胜肽自組裝與不同位向cation-π對三股螺旋穩定度之探討. 國立清華大學, 新竹市, 2019. 94. André, I., et al., Residue-Specific pKa Determination of Lysine and Arginine Side Chains by Indirect 15N and 13C NMR Spectroscopy: Application to apo Calmodulin. J. Am. Chem. Soc. 2007, 129 (51), 15805-15813. 95. Boratyński, J., et al., Colorimetric Micromethods for Glutaraldehyde Determination by Means of Phenol and Sulfuric Acid or Phenol and Perchloric Acid. Anal. Biochem. 1990, 184 (2), 259-262. 96. Koga, T., et al., Narcissistic Self-Sorting of Amphiphilic Collagen-Inspired Peptides in Supramolecular Vesicular Assembly. Langmuir 2022, 38 (7), 2294-2300. 97. Shi, H., et al., New Insights into the Structural and Binding Properties on Aβ Mature Fibrils Due to Histidine Protonation Behaviors. ACS Chem. Neurosci. 2023, 14 (2), 218-225. 98. Varanko, A., et al., Recent Trends in Protein and Peptide-Based Biomaterials for Advanced Drug Delivery. Adv. Drug Delivery Rev. 2020, 156, 133-187. 99. Tesauro, D., et al., Peptide-Based Drug-Delivery Systems in Biotechnological Applications: Recent Advances and Perspectives. Molecules 2019, 24 (2). 100. Panda, J. J., et al., Short Peptide Based Self-Assembled Nanostructures: Implications in Drug Delivery and Tissue Engineering. Polym. Chem. 2014, 5 (15), 4418-4436. 101. Altunbas, A., et al., Peptide-Based and Polypeptide-Based Hydrogels for Drug Delivery and Tissue Engineering. In Peptide-Based Materials, Deming, T., Ed. Springer Berlin Heidelberg: Berlin, Heidelberg, 2012; pp 135-167.
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