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作者(中文):謝元培
作者(外文):Hsieh, Yuan-Pei
論文名稱(中文):基於深度卷積神經網路利用注意力機制對手骨X光影像進行腕骨分割
論文名稱(外文):Carpal Bone Segmentation for Hand X-ray Image Using Attention Mechanism Based on Deep Convolution Neural Network
指導教授(中文):鐘太郎
指導教授(外文):Jong, Tai-Lang
口試委員(中文):黃裕煒
謝奇文
口試委員(外文):Huang, Yu-Wei
Hsieh, Chi-Wen
學位類別:碩士
校院名稱:國立清華大學
系所名稱:電機工程學系
學號:109061523
出版年(民國):111
畢業學年度:110
語文別:中文
論文頁數:77
中文關鍵詞:手骨X光影像腕骨切割機器學習U-NetSENet
外文關鍵詞:Hand bone X-ray imageCarpal bones segmentationMachine learningU-NetSENet
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在科技發達的社會裡發展了自動診斷系統來輔助專業醫生在進行判讀骨齡時能夠提供客觀的結果,在判讀的過程中會因為醫師的不同或是經驗豐富的與否造成判斷出的結果會不一樣,並透過輔助系統能夠適用於不同的醫院或地區。因此在本論文將著重於手掌腕骨的分割並運用於此類的自動診斷系統。
在論文流程中將所要檢測的手掌X光影像透過一系列的前處理,前處理的步驟包含切除背景、裁切影像尺寸和標記腕骨感興趣區域(Region of Interest, ROI),接著使用機器學習的方式用於腕骨分割,以卷積神經網路U-Net作為實驗模型的基底,並使用多種特性對基底模型做疊加,這些特性包含殘差、循環、注意力閘和注意力機制,透過八種特徵的組合進行實驗與使用ResNeSt + U-Net [36]的目標模型進行效能比較。在加入注意力機制SENet後,從八種組合的結果中以SEAttention R2U-Net (t=3)具有最優秀的分割結果,此外在評估SEAttention R2U-Net (t=3)模型上的IOU指標達到了89.15%,F1 score指標達到了94.25%,Accuracy指標達到了99.84%,Precision指標達到了93.23%,在這些指標上都比ResNeSt + U-Net 稍微好一些,然而在Recall指標達到了95.59%則是比ResNeSt + U-Net的Recall指標96.39%差。最後將各個組合的神經網路模型分割出的結果做出分析與探討,從結果可以預期所提出的SEAttention R2U-Net (t=3)能夠成為骨齡判讀系統的一部分,並且能夠帶給醫生或著醫療相關人員更加便利且高效率的方式做出更加準確的判讀結果,並且不會因為人為因素造成誤判。
In the diagnosis process of the bone, the results may vary depending on physician’s different viewpoint or his/her experience for judgment. Therefore, in a technologically advanced society, automated diagnostic systems have been developed to assist the professional physician in providing objective results and to make the results more consistent and applicable to different hospitals or regions. Therefore, this thesis will focus on the carpal bone segmentation for use in such automated diagnostic systems.
In the thesis, the hand X-ray image is processed through a series of pre-processing steps, which include removing the background, cropping the image size and labeling the region of interest (ROI) of the wrist bone. Then, a machine learning approach, which uses the convolutional neural network U-Net as the substrate and combines with a variety of features to stack on the base model, is adopted for the carpal bone segmentation. These features include residual, recurrent, attention gate and attention mechanism. Eight combinations of the features are experimented and a ResNeSt + U-Net model [36] is used as the target model for performance comparison. After adding the attention mechanism SENet, the resulting SEAttention R2U-Net (t=3) has the best segmentation result among the eight various combinations. Moreover, the IOU indicator on the SEAttention R2U-Net (t=3) achieved 89.15%, F1 score indicator achieved 94.25%, Accuracy indicator achieved 99.84%, Precision indicator achieved 93.23%, which are all slightly better than those of ResNeSt + U-Net. However, the Recall indicator achieved 95.59%, which was worse than 96.39% of ResNeSt + U-Net. Finally, the segmentation results of each combination are analyzed and discussed. From the results, it can be expected that the proposed SEAttention R2U-Net (t=3) can become part of the bone age assessment system, which will enable doctors and medical professionals to make more accurate diagnoses in a more convenient and efficient way without human error.
摘要 I
Abstract II
致謝 III
目錄 IV
圖目錄 VI
表目錄 IX
第一章 緒論 1
1.1 研究背景 1
1.2 文獻回顧 2
1.3 研究動機/研究目的 4
1.4 論文架構 5
第二章 研究方法 6
2.1 卷積神經網路 6
2.1.1 卷積(Convolution) 6
2.1.2 池化(Pooling) 7
2.1.3 填補(Padding) 8
2.2 神經網路模型 9
2.2.1 U-Net 9
2.2.2 ResUNet 10
2.2.3 Attention U-Net 12
2.2.4 R2U-Net 14
2.2.5 ResNeSt 16
2.2.6 SENet(Squeeze-and-Excitation Networks) 19
2.2.7 SEAttentionR2U-Net 21
2.3 損失函數 22
2.3.1 Dice Loss 23
第三章 資料庫與資料前處理 24
3.1 資料庫 24
3.2 資料分割 25
3.3 資料前處理 26
3.4 資料增強(Data augmentation) 31
第四章 實驗結果與結果分析 40
4.1 實驗環境 40
4.2 實驗設計 40
4.3 實驗目標 42
4.4 錯誤評估指標 42
4.4.1 IoU(Intersection of Union) 43
4.4.2 準確率(Accuracy) 44
4.4.3 精確率(Precision) 44
4.4.4 召回率(Recall) 44
4.4.5 F1 score 44
4.5 實驗一:各神經網路架構實驗結果 45
4.6 實驗二:使用Attention注意力機制結合神經網路架構實驗結果 48
4.7 實驗三:使用SENet結合神經網路架構實驗結果 51
4.8 結果分析 55
第五章 結論與未來展望 68
5.1結論 68
5.2未來展望 69
參考文獻 70
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